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Geoscientists reconstruct ‘eye-opening’ 900-year Northeastern U.S. climate record

Doctoral students Daniel Miller, in the water, with Helen Habicht and Benjamin Keisling, handle two recaptured sediment traps from an unusually deep lake in central Maine, where they collected 136 sediment samples spanning the 900-year time span to reconstruct the longest and highest-resolution climate record for the Northeastern United States to date.
Doctoral students Daniel Miller, in the water, with Helen Habicht and Benjamin Keisling, handle two recaptured sediment traps from an unusually deep lake in central Maine, where they collected 136 sediment samples spanning the 900-year time span to reconstruct the longest and highest-resolution climate record for the Northeastern United States to date. Credit: UMass Amherst

Deploying a new technique for the first time in the region, geoscientists at the University of Massachusetts Amherst have reconstructed the longest and highest-resolution climate record for the Northeastern United States, which reveals previously undetected past temperature cycles and extends the record 900 years into the past, well beyond the previous early date of 1850.

First author Daniel Miller, with Helen Habicht and Benjamin Keisling, conducted this study as part of their doctoral programs with advisors geosciences professors Raymond Bradley and Isla Castañeda. As Miller explains, they used a relatively new quantitative method based on the presence of chemical compounds known as branched glycerol dialkyl glycerol tetra ethers (branched GDGTs) found in lakes, soils, rivers and peat bogs around the world. The compounds can provide an independent terrestrial paleo-thermometer that accurately assesses past temperature variability.

Miller says, “This is the first effort using these compounds to reconstruct temperature in the Northeast, and the first one at this resolution.” He and colleagues were able to collect a total of 136 samples spanning the 900-year time span, many more than would be available with more traditional methods and from other locations that typically yield just one sample per 30-100 years.

In their results, Miller says, “We see essentially cooling throughout most of the record until the 1900s, which matches other paleo-records for North America. We see the Medieval Warm Period in the early part and the Little Ice Age in the 1800s.” An unexpected observation was 10, 50-to-60-year temperature cycles not seen before in records from Northeast U.S., he adds, “a new finding and surprising. We’re trying to figure out what causes that. It may be caused by changes in the North Atlantic Oscillation or some other atmospheric patterns. We’ll be looking further into it.”

He adds, “We’re very excited about this. I think it’s a great story of how grad students who come up with a promising idea, if they have enough support from their advisors, can produce a study with really eye-opening results.” Details appear in a recent issue of the European Geophysical Union’s open-access online journal, Climate of the Past.

The authors point out that paleo-temperature reconstructions are essential for distinguishing human-made climate change from natural variability, but historical temperature records are not long enough to capture pre-human-impact variability. Further, using conventional pollen- and land-based sediment samples as climate proxies can reflect confounding parameters rather than temperature, such as precipitation, humidity, evapo-transpiration and vegetation changes.

Therefore, additional quantitative paleo-temperature records are needed to accurately assess past temperature variability in the Northeast United States, the researchers point out. An independent terrestrial paleo-thermometer that relies on measuring two byproducts of processes carried out in branched GDGTs in lake sediment, a method first introduced two decades ago by researchers in The Netherlands, offered a promising alternative, Miller says.

Source organisms are not known for branch GDGTs, he points out, but they are thought to be produced in part by Acidobacteria. “These are compounds likely produced by different algae and bacteria communities in the membrane, or skin,” he notes. “Just like for humans, the skin regulates the organism’s body temperature and these compounds change in response to temperature. So if they grow in summer, they reflect that and the compounds are different than if they were produced in winter. We record the compounds to get the temperature curves. We found there seems to be a huge bloom of these organisms in the fall. After they die, they settle into the lake bottom. We think it’s mainly a fall temperature that we’re detecting.”

For this work, Miller and colleagues constructed large plastic sediment traps and deployed them about ten feet below the surface of a small, 106-foot-deep lake in central Maine in May, 2014. They then dove under to collect a catchment bottle from the bottom of each trap every month in June, July, August and September, and the following May 2015.

Miller says, “This lake is very deep for its small area, with very steep sides. It doesn’t seem to have much mixing of water layers by surface winds. We think that has helped to preserve a bottom water layer with no oxygen year-round, known as anoxia, which helps in the preservation of annual layers in the sediments at the bottom of the lake. It’s rare for a lake to have such fine, thin lines that represent annual deposition, so all you have to do is count the lines to count the years. We double-checked our results with radiocarbon dating and other methods, and it turns out that reconstructing the temperature record this way was successful.”

Miller and colleagues say this project enjoyed notable support from many quarters, including the UMass Amherst Alumni Association supporting student field work and data collection in Maine; the geology department at Bates College; funding from the U.S. Geological Survey; and at UMass Amherst, sophisticated biogeochemistry laboratory equipment and the Joe Hartshorn Memorial Award from the geosciences department, and other assistance from the Northeast Climate Adaptation Science Center.

The researchers conclude that this first paleo-temperature reconstruction coupled with site-specific knowledge from Basin Pond “informs our understanding of climatic variability in the Northeast U.S. beyond the era of human influence” and “contributes to our understanding of the production and fate of brGDGTs” in lake systems.

Reference:
Daniel R. Miller, M. Helen Habicht, Benjamin A. Keisling, Isla S. Castañeda, Raymond S. Bradley. A 900-year New England temperature reconstruction from in situ seasonally produced branched glycerol dialkyl glycerol tetraethers (brGDGTs). Climate of the Past, 2018; 14 (11): 1653 DOI: 10.5194/cp-14-1653-2018

Note: The above post is reprinted from materials provided by University of Massachusetts at Amherst.

Q&A: Creating a “Virtual Seismologist”

A snapshot of seismic data taken at a single station during the peak of an aftershock sequence
A snapshot of seismic data taken at a single station during the peak of an aftershock sequence. Credit: Zachary Ross/Caltech

Understanding earthquakes is a challenging problem—not only because they are potentially dangerous but also because they are complicated phenomena that are difficult to study. Interpreting the massive, often convoluted data sets that are recorded by earthquake monitoring networks is a herculean task for seismologists, but the effort involved in producing accurate analyses could significantly improve the development of reliable earthquake early-warning systems.

A promising new collaboration between Caltech seismologists and computer scientists using artificial intelligence (AI)—computer systems capable of learning and performing tasks that previously required humans—aims to improve the automated processes that identify earthquake waves and assess the strength, speed, and direction of shaking in real time. The collaboration includes researchers from the divisions of Geological and Planetary Sciences and Engineering and Applied Science, and is part of Caltech’s AI4Science Initiative to apply AI to the big-data problems faced by scientists throughout the Institute. Powered by advanced hardware and machine-learning algorithms, modern AI has the potential to revolutionize seismological data tools and make all of us a little safer from earthquakes.

Recently, Caltech’s Yisong Yue, an assistant professor of computing and mathematical sciences, sat down with his collaborators, Research Professor of Geophysics Egill Hauksson, Postdoctoral Scholar in Geophysics Zachary Ross, and Associate Staff Seismologist Men-Andrin Meier, to discuss the new project and future of AI and earthquake science.

What seismological problem inspired you to include AI in your research?

Meier: One of the things that I work on is earthquake early warning. Early warning requires us to try to detect earthquakes very rapidly and predict the shaking that they will produce later so that you can get a few seconds to maybe tens of seconds of warning before the shaking starts.

Hauksson: It has to be done very quickly—that’s the game. The earthquake waves will hit the closest monitoring station first, and if we can recognize them immediately, then we can send out an alert before the waves travel farther.

Meier: You only have a few seconds of seismogram to decide whether it is an earthquake, which would mean sending out an alert, or if it is instead a nuisance signal—a truck driving by one of our seismometers or something like that. We have too many false classifications, too many false alerts, and people don’t like that. This is a classic machine-learning problem: you have some data and you need to make a realistic and accurate classification. So, we reached out to Caltech’s computing and mathematical science (CMS) department and started working on it with them.

Why is AI a good tool for improving earthquake monitoring systems?

Yue: The reasons why AI can be a good tool have to do with scale and complexity coupled with an abundant amount of data. Earthquake monitoring systems generate massive data sets that need to be processed in order to provide useful information to scientists. AI can do that faster and more accurately than humans can, and even find patterns that would otherwise escape the human eye. Furthermore, the patterns we hope to extract are hard for rule-based systems to adequately capture, and so the advanced pattern-matching abilities of modern deep learning can offer superior performance than existing automated earthquake monitoring algorithms.

Ross: In a big aftershock sequence, for example, you could have events that are spaced every 10 seconds, rapid fire, all day long. We use maybe 400 stations in Southern California to monitor earthquakes, and the waves caused by each different earthquake will hit them all at different times.

Yue: When you have multiple earthquakes, and the sensors are all firing at different locations, you want to be able to unscramble which data belong to which earthquake. Cleaning up and analyzing the data takes time. But once you train a machine-learning algorithm—a computer program that learns by studying examples as opposed to through explicit programing—to do this, it could make an assessment really quickly. That’s the value.

How else will AI help seismologists?

Yue: We are not just interested in the occasional very big earthquake that happens every few years or so. We are interested in the earthquakes of all sizes that happen every day. AI has the potential to identify small earthquakes that are currently indistinguishable from background noise.

Ross: On average we see about 50 or so earthquakes each day in Southern California, and we have a mandate from the U.S. Geological Survey to monitor each one. There are many more, but they’re just too small for us to detect with existing technology. And the smaller they are, the more often they occur. What we are trying to do is monitor, locate, detect, and characterize each and every one of those events to build “earthquake catalogs.” All of this analysis is starting to reveal the very intricate details of the physical processes that drive earthquakes. Those details were not really visible before.

Why hasn’t anyone applied AI to seismology before?

Ross: Only in the last year or two has seismology started to seriously consider AI technology. Part of it has to do with the dramatic increase in computer processing power that we have seen just within the past decade.

What is the long-term goal of this collaboration?

Meier: Ultimately, we want to build an algorithm that mimics what human experts do. A human seismologist can feel an earthquake or see a seismogram and immediately tell a lot of things about that earthquake just from experience. It was really difficult to teach that to a computer. With artificial intelligence, we can get much closer to how a human expert would treat the problem. We are getting much closer to creating a “virtual seismologist.”

Why do we need a “virtual seismologist?”

Yue: Fundamentally both in seismology and beyond, the reason that you want to do this kind of thing is scale and complexity. If you can train an AI that learns, then you can take a specialized skill set and make it available to anyone. The other issue is complexity. You could have a human look at detailed seismic data for a long time and uncover small earthquakes. Or you could just have an algorithm learn to pick out the patterns that matter much faster.

Meier: The detailed information that we’re gathering helps us figure out the physics of earthquakes—why they fizzle out along certain faults and trigger big quakes along others, and how often they occur.

Will creating a “virtual seismologist” mean the end of human seismologists?

Ross: Having talked to a range of students, I can say with fairly high confidence that most of them don’t want to do cataloguing work. [Laughs.] They would rather be doing more exciting work.

Yue: Imagine that you’re a musician and before you can become a musician, first you have to build your own piano. So you spend five years building your piano, and then you become a musician. Now we have an automated way of building pianos—are we going to destroy musicians’ jobs? No, we are actually empowering a new generation of musicians. We have other problems that they could be working on.

Note: The above post is reprinted from materials provided by California Institute of Technology.

Newborn insects trapped in amber show first evidence of how to crack an egg

Four complete Tragychrysa ovoruptora newborns preserved together with egg shell remains and one visible egg burster (right inset). Credit: Modified from the open access article published in Palaeontology: 'The hatching mechanism of 130-million-year-old insects: an association of neonates, egg shells, and egg bursters in Lebanese amber'
Four complete Tragychrysa ovoruptora newborns preserved together with egg shell remains and one visible egg burster (right inset). Credit: Modified from the open access article published in Palaeontology: ‘The hatching mechanism of 130-million-year-old insects: an association of neonates, egg shells, and egg bursters in Lebanese amber’

Fossilised newborns, egg shells, and egg bursters preserved together in amber provide the first direct evidence of how insects hatched in deep time, according to a new article published today in the journal Palaeontology.

One of the earliest and toughest trials that all organisms face is birth. The new findings give scientists evidence on how tiny insects broke the barrier separating them from life and took their first steps into an ancient forest.

Trapped together inside 130 million-year-old Lebanese amber, or fossilised resin, researchers found several green lacewing newborn larvae, the split egg shells from where they hatched, and the minute structures the hatchlings used to crack the egg, known as egg bursters. The discovery is remarkable because no definitive evidence of these specialised structures had been reported from the fossil record of egg-laying animals, until now.

The fossil newborns have been described as the new species Tragichrysa ovoruptora, meaning ‘egg breaking’ and ‘tragic green lacewing’, after the fact that multiple specimens were ensnared and entombed in the resin simultaneously.

“Egg-laying animals such as many arthropods and vertebrates use egg bursters to break the egg surface during hatching; a famous example is the ‘egg tooth’ on the beak of newborn chicks,” explains Dr Ricardo Pérez-de la Fuente, a researcher at Oxford University Museum of Natural History and lead author of the work. “Egg bursters are diverse in shape and location. Modern green lacewing hatchlings split the egg with a ‘mask’ bearing a jagged blade. Once used, this ‘mask’ is shed and left attached to the empty egg shell, which is exactly what we found in the amber together with the newborns.”

Green lacewing larvae are small hunters which often carry debris as camouflage, and use sickle-shaped jaws to pierce and suck the fluids of their prey. Although the larvae trapped in amber differ significantly from modern-day relatives, in that they possess long tubes instead of clubs or bumps for holding debris, the studied egg shells and egg bursters are remarkably similar to those of today’s green lacewings. Altogether, they provide the full picture of how these fossil insects hatched like their extant counterparts, about 130 million years ago during the Early Cretaceous.

“The process of hatching is ephemeral and the structures that make it possible tend to disappear quickly once egg-laying animals hatch, so obtaining fossil evidence of them is truly exceptional,” remarks Dr Michael S. Engel, a co-author of the study from the University of Kansas.

The Tragichrysa ovoruptora larvae were almost certainly trapped by resin while clutching the eggs from which they had freshly emerged. Such behaviour is common among modern relatives while their body hardens and their predatory jaws become functional. The two mouthparts forming the jaws are not interlocked in most of the fossil larvae, which further suggests that they were recently born.

All the preparations studied were obtained from the same amber piece and are as thin as a pinhead, allowing a detailed account of the fossils and finding the tiny egg bursters, according to Dr Dany Azar, another co-author of the work, from the Lebanese University, who discovered and prepared the studied amber samples.

It would seem reasonable to assume that traits controlling a life event as crucial as hatching would have remained quite stable during evolution. However, as Dr Enrique Peñalver of the Spanish Geological Survey (IGME; Geomining Museum) and co-author of the work explains: “There are known instances in modern insects where closely related groups, even down to the species level, show different means of hatching that can entail the loss of egg bursters. So, the long-term stability of a hatching mechanism in a given animal lineage cannot be taken for granted.”

Nonetheless, this new discovery in fossil green lacewings shows the existence 130 million years ago of a sophisticated hatching mechanism which endures to this day.

Reference:
Ricardo Pérez-de la Fuente, Michael S. Engel, Dany Azar, Enrique Peñalver. The hatching mechanism of 130-million-year-old insects: an association of neonates, egg shells and egg bursters in Lebanese amber. Palaeontology, 2018; DOI: 10.1111/pala.12414

Note: The above post is reprinted from materials provided by University of Oxford.

Mammalian diversification after extinction of the dinosaurs

Researchers state that many mammals lineages coexisted with the dinosaurs before the end-Cretaceous mass extinction. Although many species of mammals also disappeared in the extinction event, several lineages survived (image: origination, extinction and diversification rates for the three mammalian clades in North America. Dotted lines denote the Cretaceous-Paleogene boundary/ Biology Letters)

Mass extinction typically conjures up a picture of a meteor falling to Earth and decimating the dinosaurs along with everything else. However, this is not exactly what happened. Different groups of living beings were affected differently by the various mass extinctions that have occurred during the planet’s history.

Consider mammals, a class of vertebrates that already existed during the dinosaur era and survived the mass extinction event in which almost all the dinosaurs were wiped out 66 million years ago, marking the end of the Cretaceous Period.

Four lineages of mammals were contemporaries of the giant reptiles. All four survived. Some were worse hit than others. In a study published in the journal Biology Letters, biologists Tiago Bosisio Quental of the University of São Paulo (USP) and Mathias Pires of the University of Campinas (UNICAMP), both from Brazil, set out to understand how the different groups of mammals made it through the end-Cretaceous mass extinction. Their research was supported by São Paulo Research Foundation — FAPESP.

“When people talk about a mass extinction, it’s assumed that they’re referring to a single extinction event of exceptional magnitude during which a large number of species became extinct in a relatively short time,” Pires said.

Another way of looking at mass extinctions consists of observing the number of species in the fossil record. It can be inferred that a mass extinction occurred in a given geological period when the total number of species that disappeared from the fossil record was much higher than the number of new species that emerged.

“In other words, the extinction rate — the speed at which species are lost — surpasses the speciation rate — the speed at which species are created. This makes the diversification rate negative, since the diversification rate is given by the difference between the extinction and speciation rates,” Pires said.

Five great mass extinctions have been identified in the fossil record in the last 500 million years (as well as many others on a smaller scale). They occurred for various reasons, such as magma spills lasting thousands or millions of years and releasing billions of tons of greenhouse gases that poisoned the atmosphere and blocked out the sun’s rays.

This is what caused the worst of all mass extinctions, in which over 90% of species vanished. It happened 252 million years ago, marking the boundary between the Permian and Triassic Periods (and between the Paleozoic and Mesozoic Eras).

Mass extinctions have also been caused by huge greenhouse effects due to the release of billions of tons of carbon gas (CO2) trapped under the seabed. One such episode is believed to have occurred at the end of the Triassic some 201 million years ago, killing 80% of all species.

The reverse has also happened, with billions of tons of CO2 being sequestered from the atmosphere and causing temperatures to crash and ice to cover the planet. This was the case 444 million years ago at the end of the Ordovician, when 86% of life forms disappeared.

The mass extinction that occurred 66 million years ago is known as the K-Pg event. The acronym refers to the end of the Cretaceous (Kreide in German) and the onset of the Paleogene (Pg).

On a larger time scale, the K-Pg event marks the boundary between the Mesozoic, the era dominated by dinosaurs, and the Cenozoic, the era extending from 66 million years ago to the present day during which mammals have been one of the dominant groups on the planet.

The K-Pg event was caused by a combination of two factors: devastating magma spills in what is now India and the impact of a comet or asteroid with a diameter of 10 km on the Yucatán peninsula in Mexico.

“All these mass extinction episodes are heterogeneous. They occurred for different reasons and unfolded in different ways. Their impact on life forms was not absolute but relative. Some groups suffered more, others less. Some disappeared, while others took advantage of the new environmental conditions after the catastrophe to diversify rapidly,” Pires said.

In the new study that was supported by FAPESP, the researchers set out to investigate how the different lineages of mammals that existed at the end of the Cretaceous succeeded in emerging from the biotic bottleneck represented by the K-Pg event. Daniele Silvestro of the University of Gothenburg (Sweden) and Brian Rankin of the University of California Berkeley (USA) also participated in the study.

The great class of mammals emerged in the Triassic at least 220 million years ago. This is the age of the oldest known fossil. At the end of the Cretaceous, mammalian species were highly diversified. There were the Eutheria or placental mammals, the clade to which Homo sapiens belongs, as do all primates, rodents, bats, cetaceans, and ungulates, among others.

In addition, there were Metatheria or marsupials, the clade to which today’s opossums, kangaroos, and koalas belong. They shared the planet with monotremes (egg-laying mammals) and multituberculates (an extinct taxon of rodent-like mammals named for the specific shape of their teeth, which had multiple tubercles).

The study by Pires and Quental stresses that mammals were particularly hard hit by the mass extinction in the Cretaceous. This does not mean that all four groups suffered equally. The mass extinction was more severe for some than for others.

During the Cretaceous, between 145 million and 66 million years ago, the multituberculates were the dominant and most diversified group of mammals. We know this because multituberculates are the vast majority in the fossil record prior to the K-Pg event. Fossils of placentals and marsupials are less numerous but also plentiful.

Monotremes are the exception. Today, they are few and far between. Indeed, they are comprised of just two families: one includes the duck-billed platypus while the other regards echidnas. Monotremes are also rare in the fossil record both before and after the Cretaceous, suggesting that the group has always been relatively marginal among mammals. For this reason, the researchers did not include monotremes in their study.

Given the knowledge that there were multituberculates, placentals, and marsupials, which group of mammals was most severely affected by the K-Pg event? Which had the most surviving genera? Which displayed the largest increase in diversity (or highest speciation rate) in the millions of years that followed the biotic bottleneck? Which group failed to recover from the cataclysm?

The only way to find answers to these questions is by analyzing the fossil record in a specific region of the planet to try to ensure that all groups of mammals were affected more or less to the same extent by the catastrophe 66 million years ago and in that region.

Quental and Pires chose North America as the focus for their study. One hundred and fifty years of continuous paleontological prospecting in the region have created a detailed picture of mammalian diversity before, during and after the K-Pg event.

“North America has a fossil record of sufficient quality for this kind of study. Other studies have been conducted to analyze how mammals as a whole survived the Cretaceous extinction, but as far we know, this is one of the first studies to analyze the dynamics of diversification in the different groups of mammals,” Quental said.

Distinct diversification patterns

The scientists used a dataset containing 188 recent fossil assemblages from the Cretaceous and Paleocene (spanning from 69.9 million to 55 million years ago) located in the western interior of North America.

“The North American mammal fossil record has the richest and most extensively studied assemblages near the K-Pg event. Fossil occurrences are relatively well resolved, minimizing taxonomic uncertainty. This dataset includes information on nearly 290 genera of mammals, including multituberculates, eutherians, and metatherians,” Quental said.

Several advanced statistical methods were used to estimate origination, extinction and diversification patterns before, during and after the K-Pg event. The results showed that the three groups emerged very differently from the mass extinction.

The origination rate for Methateria (marsupials), for example, remained approximately constant throughout the studied interval. However, a clear peak in extinction was identified during the K-Pg, generating a pulse of negative net diversification. After the K-Pg, the extinction rate gradually diminished, but negative net diversification persisted for more than 2 million years until approximately 64 million years ago.

Multituberculates were diversifying toward the end of the Cretaceous prior to the K-Pg boundary, showing high origination rates and relatively low extinction rates. Near the K-Pg boundary, the extinction rate remained low, but a drop in origination reduced the diversification of multituberculates to near zero. In other words, during the K-Pg, the diversification rate was in balance, as roughly the same number of genera were being created and becoming extinct.

According to the study, after the K-Pg boundary, the extinction rate for multituberculates continued to fall; however, the decrease in multituberculates’ origination rate was even sharper, hence leading to negative diversification. Thus, the number of genera continued to diminish throughout the rest of the period analyzed, until 55 million years ago. The decline appears to have persisted for a long time, given that the multituberculates steadily disappear from the world fossil record. The clade ends approximately 35 million years ago.

Scientists believe the reason for the disappearance of the multituberculates may have been growing competition with rodents, a new eutherian lineage that originated shortly after the K-Pg in the Paleogene.

Eutherians (placentals) display high origination and high extinction near the K-Pg, resulting in high diversity turnover. Originations were higher than extinctions, except between 66 million and 64 million years ago.

Not long after this, there was a second origination pulse accompanied by a drop in the extinction rate, evidencing a short burst in diversification. Around 62 million years ago origination decreased and diversification remained around zero, suggesting diversity equilibrium.

“We found three diversification patterns among the mammalian groups. Metatheria (marsupials) conformed to the classic mass extinction response, with several temporally clustered extinctions leading to a sharp drop in diversification,” Quental said.

Multituberculates underwent a reduction in diversity, with a decrease in diversification and subsequent diversity loss driven by declining origination rates rather than extinction. In other words, their diversity diminished because the creation of new species took a long time.

“Among eutherians there was a more complex rise-and-fall pattern due to rapid fluctuations in the speciation rate during and just after the K-Pg, while the extinction rate rose but not enough to cause negative diversification for long,” Quental said.

According to Pires, the study shows that the K-Pg mass extinction was ecologically selective among mammalian lineages. “Extinctions were concentrated among the specialized carnivorous metatherians and insectivorous eutherians, whereas more generalized eutherians and multituberculates survived and maintained higher diversity,” he said.

Although the results suggest eutherians suffered substantial losses at the K-Pg boundary, these losses were offset by increased origination. Diversification may have occurred among the survivors as other groups of eutherians came to North America from other continents.

“The dietary plasticity of multituberculates may have enabled some species to persist, explaining the low extinction rates. The ecological and taxonomic diversity of multituberculates increased during the late Cretaceous. However, our analysis shows that the multituberculates failed to offset extinction losses because they created less and less diversity, unlike the eutherians, whose losses were offset by high origination rates,” Pires said.

In their conclusion, the authors note that when clades are assessed individually, mass extinction events may be seen as shifts in extinction, in origination, or in both regimes.

“This means that studies of macroevolutionary phenomena focusing on broad taxonomic groups may miss a much richer macroevolutionary history, which can be perceived only at finer taxonomic scales,” Pires said.

Reference:
Mathias M. Pires, Brian D. Rankin, Daniele Silvestro, Tiago B. Quental. Diversification dynamics of mammalian clades during the K–Pg mass extinction. Biology Letters, 2018; 14 (9): 20180458 DOI: 10.1098/rsbl.2018.0458

Note: The above post is reprinted from materials provided by Fundação de Amparo à Pesquisa do Estado de São Paulo.

The oldest large-sized predatory dinosaur comes from the Italian Alps

Saltriovenator zanellai
Bone microstructure (A–B) and skeletal reconstruction (C) of Saltriovenator zanellai. Photos by M. Zilioli; drawing by M. Auditore.

Early Jurassic predatory dinosaurs are very rare, and mostly small in size. Saltriovenator zanellai, a new genus and species described in the peer-reviewed journal PeerJ — the Journal of Life and Environmental Sciences by Italian paleontologists, is the oldest known ceratosaurian, and the world’s largest (one ton) predatory dinosaur from the Lower Jurassic (Sinemurian, ~198 Mya).

This unique specimen, which also represents the first Jurassic dinosaur from Italy, was accidentally discovered in 1996 by a fossil amateur within a quarry near Saltrio, some 80 km N-E of Milan. Many bones of Saltriovenator bear feeding marks by marine invertebrates, which represent the first case on dinosaurian remains and indicate that the dinosaur carcass floated in a marine basin and then sunk, remaining on the sea bottom for quite a long time before burial.

Although fragmentary, “Saltriovenator shows a mosaic of ancestral and advanced anatomical features, respectively seen in the four-fingered dilophosaurids and ceratosaurians, and the three-fingered tetanuran theropods, such as allosaurids,” says first author Cristiano Dal Sasso, of the Natural History Museum of Milan, who reassembled and studied the fossil for several years.

“Paleohistological analysis indicates that Saltriovenator was a still growing subadult individual, therefore its estimated size is all the more remarkable, in the context of the Early Jurassic period,” says co-author Simone Maganuco.

“The evolutionary ‘arms race’ between stockier predatory and giant herbivorous dinosaurs, involving progressively larger species, had already begun 200 million of years ago.”

The evolution of the hand of birds from their dinosaurian ancestors is still hotly debated. “The grasping hand of Saltriovenator fills a key gap in the theropod evolutionary tree: predatory dinosaurs progressively lost the pinky and ring fingers, and acquired the three-fingered hand which is the precursor of the avian wing,” remarks co-author Andrea Cau.

Reference:
Cristiano Dal Sasso, Simone Maganuco, Andrea Cau. The oldest ceratosaurian (Dinosauria: Theropoda), from the Lower Jurassic of Italy, sheds light on the evolution of the three-fingered hand of birds. PeerJ, 2018; 6: e5976 DOI: 10.7717/peerj.5976

Note: The above post is reprinted from materials provided by PeerJ.

450 fossilized millipedes found in 100-million-year-old amber

millipede
One of the newly discovered millipede fossilized in Cretaceous amber from Myanmar (Burma). Credit: Dr Thomas Wesener CC-BY 4.0

Since the success of the Jurassic Park film series, it is widely known that insects from the Age of the Dinosaurs can be found exceptionally well preserved in amber, which is in fact fossilised tree resin.

Especially diverse is the animal fauna preserved in Cretaceous amber from Myanmar (Burma). Over the last few years, the almost 100-million-year-old amber has revealed some spectacular discoveries, including dinosaur feathers, a complete dinosaur tail, unknown groups of spiders and several long extinct groups of insects.

However, as few as three millipede species, preserved in Burmese amber, had been found prior to the study of Thomas Wesener and his PhD student Leif Moritz at the Zoological Research Museum Alexander Koenig — Leibniz Institute for Animal Biodiversity (ZFMK). Their research was recently published in the open-access journal Check List.

Having identified over 450 millipedes preserved in the Burmese amber, the scientists confirmed species representing as many as 13 out of the 16 main orders walking the Earth today. The oldest known fossils for half of these orders were found within the studied amber.

The researchers conducted their analysis with the help of micro-computed tomography (micro-CT). This scanning technology uses omni-directional X-rays to create a 3D image of the specimen, which can then be virtually removed from the amber and digitally examined.

The studied amber is mostly borrowed from private collections, including the largest European one, held by Patrick Müller from Käshofen. There are thought to be many additional, scientifically important specimens, perhaps even thousands of them, currently inaccessible in private collections in China.

Over the next few years, the newly discovered specimens will be carefully described and compared to extant species in order to identify what morphological changes have occurred in the last 100 million years and pinpoint the speciation events in the millipede Tree of Life. As a result, science will be finally looking at solving long-standing mysteries, such as whether the local millipede diversity in the southern Alps of Italy or on the island of Madagascar is the result of evolutionary processes which have taken place one, ten or more than 100-million years ago.

According to the scientists, most of the Cretaceous millipedes found in the amber do not differ significantly from the species found in Southeast Asia nowadays, which is an indication of the old age of the extant millipede lineages.

On the other hand, the diversity of the different orders seems to have changed drastically. For example, during the Age of the Dinosaurs, the group Colobognatha — millipedes characterised by their unusual elongated heads which have evolved to suck in liquid food — used to be very common. In contrast, with over 12,000 millipede species living today, there are only 500 colobognaths.

Another curious finding was the discovery of freshly hatched, eight-legged juveniles, which indicated that the animals lived and reproduced in the resin-producing trees.

“Even before the arachnids and insects, and far ahead of the first vertebrates, the leaf litter-eating millipedes were the first animals to leave their mark on land more than 400-million-years ago,” explain the scientists. “These early millipedes differed quite strongly from the ones living today — they would often be much larger and many had very large eyes.”

The larger species in the genus Arthropleura, for example, would grow up to 2 m (6.5 ft) long and 50-80 cm (2-3 ft) wide — the largest arthropods to have ever crawled on Earth. Why these giants became extinct and those other orders survived remains unknown, partly because only a handful of usually badly preserved fossils from the whole Mesozoic era (252-66-million years ago) has been retrieved. Similarly, although it had long been suspected that the 16 modern millipede orders must be very old, a fossil record to support this assumption was missing.

Reference:
Thomas Wesener, Leif Moritz. Checklist of the Myriapoda in Cretaceous Burmese amber and a correction of the Myriapoda identified by Zhang (2017). Check List, 2018; 14 (6): 1131 DOI: 10.15560/14.6.1131

Note: The above post is reprinted from materials provided by Pensoft Publishers. The original story is licensed under a Creative Commons License.

Huge armored dinosaurs battled overheating with nasal air-conditioning

Panoplosaurus mirus and Euoplocephalus tutus.
Panoplosaurus mirus and Euoplocephalus tutus. Credit: Bourke et al, 2018.

Being a gigantic dinosaur presented some challenges, such as overheating in the Cretaceous sun and frying your brain. Researchers from Ohio University and NYITCOM at Arkansas State show in a new article in PLOS ONE that the heavily armored, club-tailed ankylosaurs had a built-in air conditioner in their snouts.

“The huge bodies that we see in most dinosaurs must have gotten really hot in warm Mesozoic climates,” said Jason Bourke, Assistant Professor at the New York Institute of Technology College of Osteopathic Medicine at Arkansas State and lead author of the study. “Brains don’t like that, so we wanted to see if there were ways to protect the brain from cooking. It turns out the nose may be the key.”

Bourke and the team used CT scanning and a powerful engineering approach called computational fluid dynamics to simulate how air moved through the nasal passages of two different ankylosaur species, the hippo-sized Panoplosaurus and larger rhino-sized Euoplocephalus, to test how well ankylosaur noses transferred heat from the body to the inhaled air.

“A decade ago, my colleague Ryan Ridgely and I published the discovery that ankylosaurs had insanely long nasal passages coiled up in their snouts,” said study co-author Lawrence Witmer, professor at the Ohio University Heritage College of Osteopathic Medicine. “These convoluted airways looked like a kid’s ‘crazy-straw!’ It was completely unexpected and cried out for explanation. I was thrilled when Jason took up the problem as part of his doctoral research in our lab.”

“This project is an excellent example of how advances in CT scanning, 3-D reconstruction, imaging, and computational fluid dynamics modeling can be used in biological research to test long-standing hypotheses,” said Kathy Dickson, a program officer at the National Science Foundation that funded the research. “From these new images and models, fossils can provide further insight into extinct organisms like the ankylosaur — in this case, offering an explanation of how unusual features actually function physiologically.”

Smell may be a primary function of the nose, but noses are also heat exchangers, making sure that air is warmed and humidified before it reaches our delicate lungs. To accomplish this effective air conditioning, birds and mammals, including humans, rely on thin curls of bone and cartilage within their nasal cavities called turbinates, which increase the surface area, allowing for air to come into contact with more of the nasal walls. “Ankylosaurs didn’t have turbinates, but instead made their noses very long and twisty,” said Bourke.

When the researchers compared their findings to data from living animals, they discovered that the dinosaurs’ noses were just as efficient at warming and cooling respired air. “This was a case of nature finding a different solution to the same problem,” said Bourke.

Just how long were these nasal passages? In Panoplosaurus, they were a bit longer than the skull itself and in Euoplocephalus they were almost twice as long as the skull, which is why they’re coiled up in the snout. To see if nasal passage length was the reason for this efficiency, Bourke ran alternative models with shorter, simpler nasal passages that ran directly from the nostril to the throat, as in most other animals. The results clearly showed that nose length was indeed the key to their air-conditioning ability. “When we stuck a short, simple nose in their snouts, heat-transfer rates dropped over 50 percent in both dinosaurs. They were less efficient and didn’t work very well,” said Bourke.

Another line of evidence that these noses were air conditioners that helped cool the brain came from analyses of blood flow.

“When we reconstructed the blood vessels, based on bony grooves and canals, we found a rich blood supply running right next to these convoluted nasal passages,” said Ruger Porter, lecturer at the Ohio University Heritage College of Osteopathic Medicine and one of the study’s co-authors. “Hot blood from the body core would travel through these blood vessels and transfer their heat to the incoming air. Simultaneously, evaporation of moisture in the long nasal passages cooled the venous blood destined for the brain.”

So why the need for such effective heat exchangers? The large bodies of Panoplosaurus and Euoplocephalus were really good at retaining heat, which is good for staying warm, but bad when the animals need to cool off. This heat-shedding problem would have put them at risk of overheating even on cloudy days. In the absence of some protective mechanism, the delicate neural tissue of the brain could be damaged by the hot blood from the body core.

“Sure, their brains were almost comically small,” Bourke said. “But they’re still their brains and needed protection.”

The complicated nasal airways of these dinosaurs were acting as radiators to cool down the brain with a constant flow of cooled venous blood, allowing them to keep a cool head at all times. This natural engineering feat also may have allowed the evolution of the great sizes of so many dinosaurs.

“When we look at the nasal cavity and airway in dinosaurs, we find that the most elaborate noses are found in the large dinosaur species, which suggests that the physiological stresses of large body size may have spurred some of these anatomical novelties to help regulate brain temperatures,” Witmer said.

The next step for the researchers is to examine other dinosaurs to determine when this nasal enlargement happened.

“We know that large dinosaurs had these crazy airways, but at exactly what size did this happen?” Bourke said. “Was this elaboration gradual as body size increased, or is there a threshold size where a run-of-the-mill nose can no longer do the job? We just don’t know yet.”

The research was funded by National Science Foundation (NSF) grants to Witmer (part of the Visible Interactive Dinosaur Project) and an NSF fellowship to Bourke, as well as by the Ohio University Heritage College of Osteopathic Medicine.

Reference:
Jason M. Bourke, Wm. Ruger Porter, Lawrence M. Witmer. Convoluted nasal passages function as efficient heat exchangers in ankylosaurs (Dinosauria: Ornithischia: Thyreophora). PLOS ONE, 2018; 13 (12): e0207381 DOI: 10.1371/journal.pone.0207381

Note: The above post is reprinted from materials provided by Ohio University.

Spectacular flying reptiles soared over Britain’s tropical Jurassic past

Megalosaurus
First dinosaur ever found, the predatory Megalosaurus came from same location, in Oxfordshire Credit: MARK WITTON

Spectacular flying reptiles armed with long teeth and claws which once dominated the skies have been rediscovered, thanks to a palaeontology student’s PhD research.

Dr Michael O’Sullivan, at the University of Portsmouth, has uncovered evidence of well armed and substantial flying reptiles from historically important, but overlooked, British Jurassic fossils.

He’s also found a new species of pterosaur with a wingspan of two metres — as large as a modern mute swan, and a giant in its time.

Some 200 fossils of flying reptiles — pterosaurs — have been collected over the last two centuries from the Stonesfield Slate, but their significance has been long neglected by palaeontologists, probably because they are mere fragments.

Closer inspection has revealed evidence of multiple pterosaur lineages in the UK’s Jurassic past, including some unexpectedly large and formidably armed species.

The research is Published in Acta Palaeontologica Polonica where it is highlighted as ‘editor’s choice’.

Dr O’Sullivan, in the University’s School of Earth and Environmental Sciences, said: “It’s large fangs would have meshed together to form a toothy cage, from which little could escape once Klobiodon had gotten a hold of it.

“The excellent marine reptiles and ammonites of the UK’s Jurassic heritage are widely known, but we celebrate our Jurassic flying reptiles far less.

“The Stonesfield pterosaurs are rarely pretty or spectacular, but they capture a time in flying reptile evolution which is poorly represented globally. They have an important role to play in not only understanding the UK’s natural history, but help us understand the bigger global picture as well.”

He has named the new species Klobiodon rochei.

The generic name means ‘cage tooth’, in reference to its huge, fang-like teeth — up to 26mm long at a time when few pterosaurs had any teeth — and the species name honours comic book artist Nick Roche in recognition of the role popular media has in how extinct animals are portrayed.

Only the lower jaw of Klobiodon is known, but it has a unique dental configuration that allows it to be distinguished from other pterosaurs. It was likely a gull or tern-like creature — a coastal flier that caught fish and squid using its enormous teeth, swallowing them whole.

Much of Dr O’Sullivan’s research has involved untangling the messy science associated with these neglected specimens.

He said: “Klobiodon has been known to us for centuries, archived in a museum drawer and seen by dozens or hundreds of scientists, but it’s significance has been overlooked because it’s been confused with another species since the 1800s.”

Klobiodon and the other Stonesfield pterosaurs lived alongside one of the most famous and important dinosaurs in the world, the predatory Megalosaurus, the first dinosaur ever named. But as global sea levels were higher, and the world was much warmer, their Jurassic Britain was a series of large tropical islands.

Dr O’Sullivan was examining the Stonesfield pterosaur collections held in museums across the UK for his PhD studies when he found evidence of three distinct types of pterosaur, some of which are the oldest of their kind, as well as evidence of a new pterosaur species.

Stonesfield Slate, where the new pterosaur fossils were found, is a rich source of Jurassic fossils about 10 miles northwest of Oxford. It is where, in 1824, Britain’s first discovered dinosaur, the Megalosaurus, was found.

The quantity and quality of such fossils from the area might be why these fragments have until now been overlooked.

Reference:
Michael O’Sullivan, David Martill. Pterosauria of the Great Oolite Group (Middle Jurassic, Bathonian) of Oxfordshire and Gloucestershire, England.. Acta Palaeontologica Polonica, 2018; 63 DOI: 10.4202/app.00490.2018

Note: The above post is reprinted from materials provided by University of Portsmouth.

‘Treasure trove’ of dinosaur footprints found in southern England

Two large iguanodontian footprints with skin and claw impressions. Credit: Neil Davies

More than 85 well-preserved dinosaur footprints — made by at least seven different species — have been uncovered in East Sussex, representing the most diverse and detailed collection of these trace fossils from the Cretaceous Period found in the UK to date.

The footprints were identified by University of Cambridge researchers between 2014 and 2018, following periods of coastal erosion along the cliffs near Hastings. Many of the footprints — which range in size from less than 2 cm to over 60 cm across — are so well-preserved that fine detail of skin, scales and claws is easily visible.

The footprints date from the Lower Cretaceous epoch, between 145 and 100 million years ago, with prints from herbivores including Iguanodon, Ankylosaurus, a species of stegosaur, and possible examples from the sauropod group (which included Diplodocus and Brontosaurus); as well as meat-eating theropods. The results are reported in the journal Palaeogeography, Palaeoclimatology, Palaeoecology.

Over the past 160 years, there have been sporadic reports of fossilised dinosaur footprints along the Sussex coast, but no new major discoveries have been described for the past quarter century and the earlier findings were far less varied and detailed than those described in the current research.

The area around Hastings is one of the richest in the UK for dinosaur fossils, including the first known Iguanodon in 1825, and the first confirmed example of fossilised dinosaur brain tissue in 2016. However, trace fossils such as footprints, which can help scientists learn more about the composition of dinosaur communities, are less common in the area.

“Whole body fossils of dinosaurs are incredibly rare,” said Anthony Shillito, a PhD student in Cambridge’s Department of Earth Sciences and the paper’s first author. “Usually you only get small pieces, which don’t tell you a lot about how that dinosaur may have lived. A collection of footprints like this helps you fill in some of the gaps and infer things about which dinosaurs were living in the same place at the same time.”

The footprints described in the current study, which Shillito co-authored with Dr Neil Davies, were uncovered during the past four winters, when strong storms and storm surges led to periods of collapse of the sandstone and mudstone cliffs.

In the Cretaceous Period, the area where the footprints were found was likely near a water source, and in addition to the footprints, a number of fossilised plants and invertebrates were also found.

“To preserve footprints, you need the right type of environment,” said Davies. “The ground needs to be ‘sticky’ enough so that the footprint leaves a mark, but not so wet that it gets washed away. You need that balance in order to capture and preserve them.”

“As well as the large abundance and diversity of these prints, we also see absolutely incredible detail,” said Shillito. “You can clearly see the texture of the skin and scales, as well as four-toed claw marks, which are extremely rare.

“You can get some idea about which dinosaurs made them from the shape of the footprints — comparing them with what we know about dinosaur feet from other fossils lets you identify the important similarities. When you also look at footprints from other locations you can start to piece together which species were the key players.”

As part of his research, Shillito is studying how dinosaurs may have affected the flows of rivers. In modern times, large animals such as hippopotamuses or cows can create small channels, diverting some of the river’s flow.

“Given the sheer size of many dinosaurs, it’s highly likely that they affected rivers in a similar way, but it’s difficult to find a ‘smoking gun’, since most footprints would have just washed away,” said Shillito. “However, we do see some smaller-scale evidence of their impact; in some of the deeper footprints you can see thickets of plants that were growing. We also found evidence of footprints along the banks of river channels, so it’s possible that dinosaurs played a role in creating those channels.”

It’s likely that there are many more dinosaur footprints hidden within the eroding sandstone cliffs of East Sussex, but the construction of sea defences in the area to slow or prevent the process of coastal erosion may mean that they remained locked within the rock.

The research was funded by the Natural Environment Research Council (NERC).

Reference:
Anthony P. Shillito, Neil S. Davies. Dinosaur-landscape interactions at a diverse Early Cretaceous tracksite (Lee Ness Sandstone, Ashdown Formation, southern England). Palaeogeography, Palaeoclimatology, Palaeoecology, 2019; 514: 593 DOI: 10.1016/j.palaeo.2018.11.018

Note: The above post is reprinted from materials provided by University of Cambridge. The original story is licensed under a Creative Commons License.

Rare-earth elements discovered in Georgia kaolin mines, study finds

Credit: Georgia State University

The high-density minerals in the Georgia kaolin mines are potential sources of rare-earth elements, including the heavy rare-earth elements that are in high demand for many important uses and are mostly imported to the United States from China, according to a study led by Georgia State University and Thiele Kaolin Co.

Rare-earth elements are used to make critical products, including magnetic resonance imaging (MRI) contrast agents, X-ray intensifying screens, portable X-ray machines, medical lasers, fiber optics, optical lenses, pressure sensors, monitors and television screens, fluorescent lamps, rechargeable battery electrodes and permanent magnets.

There are 17 rare-earth elements, which include the 15 elements of the lanthanide series (atomic numbers 57 to 71 on the periodic table), plus scandium (Sc) and yttrium (Y). The heavy rare-earth elements are from gadolinium (Gd) to lutetium (Lu), atomic numbers 64 to 71 on the periodic table.

Thiele Kaolin Co. mined for kaolin in two quarries near Sandersville, Ga., and provided Georgia State researchers with the leftover mineral samples, or grit, for analysis. The minerals present were identified using X-ray diffraction, scanning electron microscopy and chemical analysis. The findings, published in the journal Clays and Clay Minerals, suggest a new, potential source of rare-earth elements, including the less common heavy rare-earth elements.

“We were interested in looking at the very course, sand-sized material from the kaolin ore that they call grit. It accounts for about 10 percent of the mined material and is removed before they make finished kaolin products for a variety of applications, such as paper, paints, adhesives, plastics, ceramics, etc.,” said Dr. W. Crawford Elliott, senior author of the study and associate professor in the Department of Geosciences at Georgia State. “They gave us samples of the grit. When we processed these samples, we found a particular enrichment in the heavy rare-earth elements, gadolinium through lutetium. An enrichment in the heavy rare-earth elements is interesting and useful because in most cases, the Earth’s crust is enriched in the lighter rare-earth elements. The heavy rare-earth elements tend to be more technologically important.

“After we did a heavy liquid separation on that material, we found the Buffalo Creek Kaolin Member is about 100 times more enriched in the heavy rare-earth elements relative to concentrations in upper continental crust. Our work suggests a way to obtain heavy rare-earth elements from kaolin ore, which hasn’t been done before. This constitutes a new resource for the rare-earth elements, which we are getting all from China.”

Note: The above post is reprinted from materials provided by Georgia State University.

Early animals: Death near the shoreline, not life on land

Close-up of a looping millipede death-trail.
Close-up of a looping millipede death-trail. Credit: Photo by Anthony Shillito

Our understanding of when the very first animals started living on land is helped by identifying trace fossils — the tracks and trails left by ancient animals — in sedimentary rocks that were deposited on the continents.

Geoscientists Anthony P. Shillito and Neil S. Davies of the University of Cambridge studied the site of what has widely been accepted as the earliest set of non-marine trackways, in Ordovician (ca. 455 million-year-old) strata from the Lake District, England.

What they discovered is that the trackways occur within volcanic ash that settled under water, and not within freshwater lake and sub-aerial sands (as previously thought). This means that the site is not the oldest evidence for animal communities on land, but instead “is actually a remarkable example of a ‘prehistoric Pompeii’,” says Shillito — a suite of rocks that preserve trails made by distressed and dying millipede-like arthropods as they were overcome by ash from volcanic events.

Shillito and Davies directed their research at this site in particular because it seemed unusual — at every other known trackway site in the world the evidence for when animals came onto land dates to the latest Silurian (ca. 420 million years ago), so something about the Borrowdale site didn’t seem right. Further investigation proved that this was the case. In the course of their study, they found 121 new millipede trackways, all within volcanic ash with evidence for underwater or shoreline deposition.

Volcanic ash is known to cause mass death in some modern arthropod communities, particularly in water, because ash is so tiny it can get inside arthropod exoskeletons and stick to their breathing and digestive apparatus. Shilllito and Davies noticed that most of the trails were extremely tightly looping — a feature which is commonly associated with “death dances” in modern and ancient arthropods.

This study, published in Geology, overturns what is known about the earliest life on land and casts new light onto one of the key evolutionary events in the history of life on Earth. Shillito notes, “It reveals how even surprising events can be preserved in the ancient rock record, but — by removing the ‘earliest’ outlier of evidence — suggests that the invasion of the continents happened globally at the same time.”

Understanding how life engineered major evolutionary advances within environments, and the rate and impact of these advances on the functioning of the Earth system, provides vital context for understanding global change at the present day, and underlines the inseparable relationship between life and the planet.

Reference:
Anthony P. Shillito, Neil S. Davies. Death near the shoreline, not life on land: Ordovician arthropod trackways in the Borrowdale Volcanic Group, UK. Geology, 2018; DOI: 10.1130/G45663.1

Note: The above post is reprinted from materials provided by Geological Society of America.

Fossils suggest flowers originated 50 million years earlier than thought

Nanjinganthus fossil
This is a Nanjinganthus fossil, showing its ovary (bottom centre), sepals and petals (on the sides) and a tree-shaped top. Credit: Fu et al., 2018

Scientists have described a fossil plant species that suggests flowers bloomed in the Early Jurassic, more than 174 million years ago, according to new research in the open-access journal eLife.

Before now, angiosperms (flowering plants) were thought to have a history of no more than 130 million years. The discovery of the novel flower species, which the study authors named Nanjinganthus dendrostyla, throws widely accepted theories of plant evolution into question, by suggesting that they existed around 50 million years earlier. Nanjinganthus also has a variety of ‘unexpected’ characteristics according to almost all of these theories.

Angiosperms are an important member of the plant kingdom, and their origin has been the topic of long-standing debate among evolutionary biologists. Many previously thought angiosperms could be no more than 130 million years old. However, molecular clocks have indicated that they must be older than this. Until now, there has been no convincing fossil-based evidence to prove that they existed further back in time.

“Researchers were not certain where and how flowers came into existence because it seems that many flowers just popped up in the Cretaceous from nowhere,” explains lead author Qiang Fu, Associate Research Professor at the Nanjing Institute of Geology and Paleontology, China. “Studying fossil flowers, especially those from earlier geologic periods, is the only reliable way to get an answer to these questions.”

The team studied 264 specimens of 198 individual flowers preserved on 34 rock slabs from the South Xiangshan Formation — an outcrop of rocks in the Nanjing region of China renowned for bearing fossils from the Early Jurassic epoch. The abundance of fossil samples used in the study allowed the researchers to dissect some of them and study them with sophisticated microscopy, providing high-resolution pictures of the flowers from different angles and magnifications. They then used this detailed information about the shape and structure of the different fossil flowers to reconstruct the features of Nanjinganthus dendrostyla.

The key feature of an angiosperm is ‘angio-ovuly’ — the presence of fully enclosed ovules, which are precursors of seeds before pollination. In the current study, the reconstructed flower was found to have a cup-form receptacle and ovarian roof that together enclose the ovules/seeds. This was a crucial discovery, because the presence of this feature confirmed the flower’s status as an angiosperm. Although there have been reports of angiosperms from the Middle-Late Jurassic epochs in northeastern China, there are structural features of Nanjinganthus that distinguish it from these other specimens and suggest that it is a new genus of angiosperms.

Having made this discovery, the team now wants to understand whether angiosperms are either monophyletic — which would mean Nanjinganthus represents a stem group giving rise to all later species — or polyphyletic, whereby Nanjinganthus represents an evolutionary dead end and has little to do with many later species.

“The origin of angiosperms has long been an academic ‘headache’ for many botanists,” concludes senior author Xin Wang, Research Professor at the Nanjing Institute of Geology and Paleontology. “Our discovery has moved the botany field forward and will allow a better understanding of angiosperms, which in turn will enhance our ability to efficiently use and look after our planet’s plant-based resources.”

Reference:
Qiang Fu, Jose Bienvenido Diez, Mike Pole, Manuel García Ávila, Zhong-Jian Liu, Hang Chu, Yemao Hou, Pengfei Yin, Guo-Qiang Zhang, Kaihe Du, Xin Wang. An unexpected noncarpellate epigynous flower from the Jurassic of China. eLife, 2018; 7 DOI: 10.7554/eLife.38827

Note: The above post is reprinted from materials provided by eLife.

Horned dinosaur Crittendenceratops discovered in Arizona

Crittendeceratops
Crittendeceratops restoration. Credit: Sergey Krasovskiy

Palentologists are announcing a new dinosaur discovery in the southwest United States. Crittendenceratops krzyzanowskii is a new ceratopsid (horned) dinosaur from 73-million-year-old (Late Cretaceous) rocks in southern Arizona. It is one of the few dinosaurs named from Arizona.

Crittendenceratops krzyzanowskii was named by Sebastian Dalman, John-Paul Hodnett, Asher Lichtig and Spencer Lucas, Ph.D, in an article recently published in the New Mexico Museum of Natural History & Science Bulletin.

Dalman and Lichtig are Research Associates of the New Mexico Museum of Natural History & Science (NMMNHS), Lucas is a curator at NMMNHS, and Hodnett is a paleontologist employed by the Maryland-National Capital Parks Commission.

The name Crittendenceratops is for the Fort Crittenden Formation (the rock formation that yielded the dinosaur fossils) and Greek ceratops, which means horned face. The species name krzyzanowskii is for the late Stan Krzyzanowski, a NMMNHS Research Associate who discovered the bones of the new dinosaur.

Crittendenceratops belongs to a group of horned dinosaurs called the centrosaurs, and can be distinguished from other centrosaurs by the unique shape of the bones in its frill (head shield). Crittendenceratrops was about 11 feet long and weighed an estimated three-quarters of a ton. Like other ceratopsids, Crittendenceratops was a plant eater.

The rocks that yielded the bones were deposited along the margins of a large lake that was present in an area southeast of Tucson, Arizona during the Late Cretaceous.

Reference:
A New Ceratopsid Dinosaur (Centrosaurinae: Nasutoceratopsini) From The Fort Crittenden Formation, Upper Cretaceous (Campanian) Of Arizona. www.researchgate.net/publicati … CAMPANIAN_OF_ARIZONA

Note: The above post is reprinted from materials provided by New Mexico Museum of Natural History & Science.

Deadly Indonesian tsunami was unleashed by landslide in Palu Bay, study suggests

Map of landslide
Map of landslide. Credit: Brunel University London

September’s deadly Indonesian tsunami, which killed almost 2000 people, was probably caused by a huge submarine landslide off Sulawesi Island’s west coast, a new study shows.

Until now, scientists have been left puzzled by how an earthquake of just 7.5 magnitude – not significant enough to trigger Indonesia’s tsunami early-warning system – was able to wreck such devastation.

But a new analysis of wave data by researchers at Brunel University London has pinpointed an area in Palu Bay, on Sulawesi Island’s west coast, as the probable location of a massive under water landslide caused by the earthquake.

“This event is puzzling for two reasons,” said Dr. Mohammad Heidarzadeh, Assistant Professor of Civil Engineering at Brunel, who led the study.

“Firstly, the earthquake’s magnitude was moderate. Usually an earthquake would require a magnitude of at least 8.4 or 8.5 to trigger such a large tsunami – at peak the wave reached 11 metres. Secondly, the mechanism of the earthquake’s rupture was a strike-slip – the ground ruptured horizontally, rather than vertically.

“This is confusing as we’d have therefore expected a wave of only 1 or 2 metres from a Sulawesi-style earthquake.”

However, the new study – published in the journal of Pure and Applied Geophysics – now shows the earthquake likely did trigger a landslide large enough to unleash the devasting tsunami.

New sea-level analysis shows that the Sulawesi tsunami had very short-period waves, in-line with those caused by a landslide. Where tsunamis caused by landslides typically have a wave period of 3 to 4 minutes, tsunamis unleashed by an earthquake will have a wave period of 15 to 60 minutes.

Field studies also revealed that the largest waves were concentrated on just a small segment of coast, which is consistent with the tsunami being caused by a landslide.

“Our analyses are based on sea-level data of real waves generated by the Sulawesi tsunami, analysis of the seafloor rupture and deformation generated by the earthquake, and computer simulations of the real tsunami propagation,” said Dr. Heidarzadeh.

The study also ruled out another proposed theory for the cause of the tsunami – the funnelling of water up the bay, or bay oscillations.

“Our analysis completely ruled out those speculations,” said Dr. Heidarzadeh. “We proved that bay oscillations cannot make 11 metre high waves.”
null

Reference:
Mohammad Heidarzadeh et al. Insights on the Source of the 28 September 2018 Sulawesi Tsunami, Indonesia Based on Spectral Analyses and Numerical Simulations, Pure and Applied Geophysics (2018). DOI: 10.1007/s00024-018-2065-9

Note: The above post is reprinted from materials provided by Brunel University.

New discovery pushes origin of feathers back by 70 million years

Daohugou pterosaur
A reconstruction of the studied Daohugou pterosaur, with four different feather types over its head, neck, body, and wings, and a generally ginger-brown color. Credit: Reconstruction by Yuan Zhang.

An international team of palaeontologists, which includes the University of Bristol, has discovered that the flying reptiles, pterosaurs, actually had four kinds of feathers, and these are shared with dinosaurs — pushing back the origin of feathers by some 70 million years.

Pterosaurs are the flying reptiles that lived side by side with dinosaurs, 230 to 66 million years ago. It has long been known that pterosaurs had some sort of furry covering often called ‘pycnofibres’, and it was presumed that it was fundamentally different to feathers of dinosaurs and birds.

In a new work published today in the journal Nature Ecology & Evolution, a team from Nanjing, Bristol, Cork, Beijing, Dublin, and Hong Kong show that pterosaurs had at least four types of feathers:

  • simple filaments (‘hairs’)
  • bundles of filaments,
  • filaments with a tuft halfway down
  • down feathers.

These four types are now also known from two major groups of dinosaurs — the ornithischians, which were plant-eaters, and the theropods, which include the ancestors of birds.

Baoyu Jiang of Nanjing University, who led the research, said: “We went to Inner Mongolia to do fieldwork in the Daohugou Formation.

“We already knew that the sites had produced excellent specimens of pterosaurs with their pycnofibres preserved and I was sure we could learn more by careful study.”

Zixiao Yang, also of Nanjing University, has studied the Daohugou localities and the pterosaurs as part of his PhD work. He said: “This was a fantastic opportunity to work on some amazing fossils.

“I was able to explore every corner of the specimens using high-powered microscopes, and we found many examples of all four feathers.”

Maria McNamara of University College Cork, added: “Some critics have suggested that actually there is only one simple type of pycnofibre, but our studies show the different feather types are real.

“We focused on clear areas where the feathers did not overlap and where we could see their structure clearly. They even show fine details of melanosomes, which may have given the fluffy feathers a ginger colour.”

Professor Mike Benton from the University of Bristol’s School of Earth Sciences, said: “We ran some evolutionary analyses and they showed clearly that the pterosaur pycnofibres are feathers, just like those seen in modern birds and across various dinosaur groups.

“Despite careful searching, we couldn’t find any anatomical evidence that the four pycnofibre types are in any way different from the feathers of birds and dinosaurs. Therefore, because they are the same, they must share an evolutionary origin, and that was about 250 million years ago, long before the origin of birds.”

Birds have two types of advanced feathers used in flight and for body smoothing, the contour feathers with a hollow quill and barbs down both sides.

These are found only in birds and the theropod dinosaurs close to bird origins. But the other feather types of modern birds include monofilaments and down feathers, and these are seen much more widely across dinosaurs and pterosaurs.

The armoured dinosaurs and the giant sauropods probably did not have feathers, but they were likely suppressed, meaning they were prevented from growing, at least in the adults, just as hair is suppressed in whales, elephants, and hippos. Pigs are a classic example, where the piglets are covered with hair like little puppies, and then, as they grow, the hair growth is suppressed.

Professor Benton added: “This discovery has amazing implications for our understanding of the origin of feathers, but also for a major time of revolution of life on land.

“When feathers arose, about 250 million years ago, life was recovering from the devasting end-Permian mass extinction.

“Independent evidence shows that land vertebrates, including the ancestors of mammals and dinosaurs, had switched gait from sprawling to upright, had acquired different degrees of warm-bloodedness, and were generally living life at a faster pace.

“The mammal ancestors by then had hair, so likely the pterosaurs, dinosaurs and relatives had also acquired feathers to help insulate them.

“The hunt for feathers in fossils is heating up and finding their functions in such early forms is imperative. It can rewrite our understanding of a major revolution in life on Earth during the Triassic, and also our understanding of the genomic regulation of feathers, scales, and hairs in the skin.”

Reference:
Zixiao Yang, Baoyu Jiang, Maria E. McNamara, Stuart L. Kearns, Michael Pittman, Thomas G. Kaye, Patrick J. Orr, Xing Xu, Michael J. Benton. Pterosaur integumentary structures with complex feather-like branching. Nature Ecology & Evolution, 2018; 3 (1): 24 DOI: 10.1038/s41559-018-0728-7

Note: The above post is reprinted from materials provided by University of Bristol.

Surviving one of Earth’s most extreme environments

Yellowstone National Park
Yellowstone National Park

Even in Earth’s most inhospitable environments, life has taken hold.

Extremophiles are the organisms most well-known for withstanding extreme temperatures, pHs, salinity, and even nutrient-starvation. They have evolved special mechanisms that enable them to survive in their environments, but getting to the bottom of that resilience requires targeted and methodical interrogation.

At Yellowstone National Park and similar sites, extremophiles reside in environments such as acid hot springs or thermal acid soils. Here they are exposed, often intermittently, to some of the lowest naturally-occurring pHs on Earth, and temperatures nearing the boiling point of water. To survive in these rapidly fluctuating conditions, organisms protect themselves with complex membranes, composed of interlocked lipids linked to their backbones with strong ether bonds, rather than the ester bonds most commonly found in eukaryotes and bacteria.

In Sulfolobus acidocaldarius, an archaeon that lives in high-acid, high-temperature environments that are common in Yellowstone, cellular membrane lipids called glycerol dialkyl glycerol tetraether (GDGTs) are linked to an uncommon sugar-like molecule called calditol. A group of scientists recently published findings in the Proceedings of the National Academy of Sciences (PNAS), identifying how calditol is made in the cell and how, specifically, it is responsible for acid-tolerance in these organisms. The work is helping scientists get closer to understanding how life evolved to survive in extreme environments.

Roger Summons, the Schlumberger Professor of Geobiology in MIT’s Department of Earth, Atmospheric and Planetary Sciences (EAPS) and one of the authors of the study, credits advances in molecular biology, bioinformatics, and targeted gene deletion strategies for enabling this discovery.

“The era of genomics has brought a range of new tools to advance lipid biomarker research,” Summons says. Paula Welander, a former EAPS postdoc in the Summons Lab and now assistant professor in the Department of Earth System Science at Stanford University, directed the study that was also conducted by Zhirui Zeng and Jeremy H. Wei at Stanford, and Xiao-lei Liu, an assistant professor of organic geochemistry at the University of Oklahoma.

“This study is an excellent example of how an interdisciplinary approach, including microbial physiologists and organic geochemists, can address outstanding questions regarding lipid biomarkers,” Welander says.

To identify calditol’s role in the Sulfolobus acidocaldarius membranes, the researchers used tools in comparative genomics, gene deletion, and lipid analysis to zero in on a particular protein within the class of radical S-andenosylmethionine (SAM) enzymes that is required to synthesize calditol. When they searched for what coded that protein in calditol-producing archaeal genomes, they found just a few candidate genes.

To test the protein’s importance for acid tolerance, the researchers created mutants—with the membrane-related genes deleted—and analyzed their lipids. By subjecting the calditol-free mutant to highly acidic conditions, the researchers were able to confirm the true function of the calditol component of the membrane. Only the naturally-occurring, calditol-producing Sulfolobus and the mutant strain with the radical-SAM gene restored, were able to grow after a significant drop in pH.

“While Welander and colleagues have demonstrated the presence of radical-SAM lipid biosynthesis genes in bacteria, this is the first time one has been unambiguously identified in archaea,” Summons says. “Calditol-linked to membrane lipids in these organisms confer significant protective effects.”

Adds Welander: “Researchers have hypothesized for many years that producing calditol would provide this type of protective effect, but this has not been demonstrated directly. Here we finally show this link directly.”

Even further, the fact that a radical SAM protein is involved in linking calditol to the membranes might help scientists better understand the chemistry and evolution of membrane lipids from a wide variety of environments across the planet.

Summons says the result speaks to “the possible presence of a variety of other radical chemistries to modify membrane lipids once they’ve been synthesized.”

“In turn, this could help us better understand the biosynthesis of other archaea-specific lipids and help us write the evolutionary history of these strikingly distinctive membranes,” he says.

Reference:
Zhirui Zeng et al. Calditol-linked membrane lipids are required for acid tolerance in Sulfolobus acidocaldarius, Proceedings of the National Academy of Sciences (2018). DOI: 10.1073/pnas.1814048115

Note: The above post is reprinted from materials provided by Massachusetts Institute of Technology.

Scientists discover how birds and dinosaurs evolved to dazzle with colourful displays

Two of the fossils sampled for the study with the fossil melanosomes found in each fossil (scanning electron microscope images). Scaniacypselus to the left and Primotrogon to the right. Melanosome shape varies in the different samples, and is indicative of color. The sample furthest to the left was predicted to be iridescent. Credit: Photographs of Scaniacypselus and Primotrogon by Jakob Vinther and Fiann Smithwick.
Two of the fossils sampled for the study with the fossil melanosomes found in each fossil (scanning electron microscope images). Scaniacypselus to the left and Primotrogon to the right. Melanosome shape varies in the different samples, and is indicative of color. The sample furthest to the left was predicted to be iridescent. Credit: Photographs of Scaniacypselus and Primotrogon by Jakob Vinther and Fiann Smithwick.

Iridescence is responsible for some of the most striking visual displays in the animal kingdom. Now, thanks to a new study of feathers from almost 100 modern bird species, scientists have gained new insights into how this colour diversity evolved.

Iridescence refers to the phenomena where colour changes when an object is viewed from different angles. Birds produce this varying coloration in their feathers by using nanoscale arrays of melanin-filled organelles (melanosomes) layered with keratin. In this form of structural colouration, the shapes of melanosomes together with the thickness of keratin layers determine what colour is produced.

While melanosome morphology has previously been used to predict colour in fossil animals, melanosome variation in iridescent feathers has not been analysed on as large a scale until this study.

As reported in the journal Evolution, a team of University of Bristol researchers used scanning electron microscopy to quantify melanosome extracts from the feathers of 97 species of modern birds with iridescent plumage, taken from the collections of the Zoological Museum of Copenhagen.

The study showed that iridescent feathers contain the most varied melanosome morphologies of all types of bird coloration sampled to date. Unlike black, grey and brown feathers that always contain solid melanosomes, iridescent feathers can contain melanosomes that are hollow and/or flattened.

“We found that melanosomes in modern iridescent feathers are more diverse in shape than those found in grey, black or brown feathers combined (that also contain melanosomes),” said lead author Klara Nordén, who conducted the study during her undergraduate years at Bristol’s School of Earth Sciences. “It is already known that structural coloration is responsible for 70 per cent of the colour variability in birds. These two facts might be coupled — birds evolved varied forms of melanosomes to achieve ever greater diversity in colour.

“I wanted to find out if we could improve current predictive models for fossil colour based on melanosome morphology by including all types of melanosomes found in iridescent feathers.”

Dr Jakob Vinther, co-author of the study and a leading researcher in the field of paleocolour at Bristol’s School of Biological Sciences, had already collected the perfect fossil samples to test the new model on.

“We had sampled Scaniacypselus, related to modern tree swifts, and Primotrogon, ancestor to modern trogons. These groups are iridescent today and have flat and hollow melanosomes. Did their 48-million-year-old ancestors from Germany also have iridescent plumage?”

Interestingly, the model predicted that Primotrogon probably was iridescent, but it used solid rather than hollow melanosomes, unlike its modern descendants.

“This demonstrates how we now have the tools to map out the evolution of iridescence in fossil lineages,” said Klara, who is now a PhD student at Princeton University. “It opens the door to many new discoveries of dazzling displays in fossil birds and other dinosaurs.”

The current study focused on mapping out how melanosomes vary in iridescent feathers. Further avenues of research might examine why birds utilise such diversity of melanosome types in iridescent feathers. These insights could ultimately enhance our understanding of why fossil birds or dinosaurs might have used such morphologies, revealing something about their behaviour.

Reference:
Klara K. Nordén, Jaeike Faber, Frane Babarović, Thomas L. Stubbs, Tara Selly, James D. Schiffbauer, Petra Peharec Štefanić, Gerald Mayr, Fiann M. Smithwick, Jakob Vinther. Melanosome diversity and convergence in the evolution of iridescent avian feathers-Implications for paleocolor reconstruction. Evolution, 2018; DOI: 10.1111/evo.13641

Note: The above post is reprinted from materials provided by University of Bristol.

Tiny Australian wallaby the last living link to extinct giant kangaroos

This is a drawing of the extinct Australian giant short-faced kangaroo Simosthenurus occidentalis, part of the Sthenurinae sub-family.
This is a drawing of the extinct Australian giant short-faced kangaroo Simosthenurus occidentalis, part of the Sthenurinae sub-family. mtDNA from the petrous bones of Simosthenurus occidentalis has linked extinct Sthenurinae with Australia’s living banded hare-wallaby. Credit: Joseph Burgess

A Queensland University of Technology (QUT) led collaboration with University of Adelaide reveals that Australia’s pint-sized banded hare-wallaby is the closest living relative of the giant short-faced kangaroos which roamed the continent for millions of years, but died out about 40,000 years ago.

Published in Systematic Biology, the research involved the first near-complete mitochondrial (mt) genome sequencing from extinct Australian megafauna.

  • DNA was sequenced from inner ear bones (petrous bones) of a 45,000-year-old giant short-faced kangaroo, Simosthenurus occidentalis, part of the Sthenurinae sub-family, found at Mt Cripps in Tasmania
  • These are the longest DNA sequences ever recovered from Australia’s extinct megafauna, with more than 16,000 base pairs of mtDNA, which is used to help understand evolutionary relationships
  • The results support an evolutionary link between giant short-faced kangaroos (Sthenurinae) and the threatened banded hare-wallaby, Lagostrophus fasciatus
  • The study also combined the DNA evidence with fossil and anatomical data to trace body size change over the evolutionary history of kangaroos and wallabies

The analysis was conducted by QUT evolutionary biologists PhD researcher Manuela Cascini and Associate Professor Matthew Phillips, from the Science and Engineering Faculty, in collaboration with University of Adelaide’s Professor Alan Cooper and Dr Kieren Mitchell, who undertook the DNA sequencing at the Australian Centre for Ancient DNA.

Lead author Ms Cascini, a molecular biologist who moved from Italy to undertake her PhD research with Associate Professor Phillips, said her project also involved analysis of mtDNA sequenced from the inner ear bones of another ancient extinct macropod that was found in Tasmania — the giant wallaby, Protemnodon anak, which weighed up to 150 kilograms.

Small fragments of ancient DNA sequenced from this giant wallaby species and from the giant short-faced kangaroo were first reported on by University of Adelaide scientists in 2015.

“Our analysis confirmed their conclusion that the giant wallabies are close relatives of the iconic living ‘Macropus’ genus of kangaroos and wallabies,” Ms Cascini said.

“However that earlier study provided insufficient DNA to confidently place the giant short-faced kangaroos on the evolutionary tree.

“We’ve now been able to show the strongest evidence yet that the closest living relative of these massive Sthenurinae kangaroos, which weighed up to about 240 kilograms, is the tiny, 2-kilogram banded hare-wallaby. These wallabies live in the wild only on islands off Western Australia and are classified as vulnerable.”

Associate Professor Phillips said the larger amount of mtDNA sequenced in this study by the University of Adelaide collaborators helped enable the strong finding on the banded hare-wallaby link.

“This is by far the most genetic data that anyone has extracted out of Australian megafauna, and it was taken from the petrous bones which are denser and often seem to hold DNA better,” he said.

“You find a lot of ancient DNA studies of megafauna from permafrost in northern Europe and northern America because the cold helps preserve the DNA. But in Australia the hotter climate and older age of the megafauna is far less favourable for DNA preservation.”

Dr Mitchell said Tasmania’s cooler climate and higher-altitude caves “make for much better DNA preservation than we find elsewhere in Australia, so we focused our hunt for high-quality megafaunal DNA there.”

Associate Professor Phillips said other findings of the study on the evolution of kangaroos and wallabies (macropods) included:

  • The macropod ancestors diverged from tree-living possums around 41 to 46 million years ago
  • They remained small, in the 2-15 kg range, while Australia was more dominated by rainforest
  • As the climate cooled and dried, and as the forests opened up over the past 10 million years, at least four different kangaroo lineages independently evolved to megafaunal size (more than 44 kg)
  • This includes the short-faced kangaroos, the giant Protemnodon wallabies, and the living red and grey kangaroos.

Reference:
Manuela Cascini, Kieren J Mitchell, Alan Cooper, Matthew J Phillips. Reconstructing the Evolution of Giant Extinct Kangaroos: Comparing the Utility of DNA, Morphology, and Total Evidence. Systematic Biology, 2018; DOI: 10.1093/sysbio/syy080

Note: The above post is reprinted from materials provided by Queensland University of Technology.

Life in Deep Earth totals 15 to 23 billion tons of carbon — hundreds of times more than humans

A nematode (eukaryote) in a biofilm of microorganisms. This unidentified nematode (Poikilolaimus sp.) from Kopanang gold mine in South Africa, lives 1.4 km below the surface. Credit: Gaetan Borgonie, Extreme Life Isyensya, Belgium
A nematode (eukaryote) in a biofilm of microorganisms. This unidentified nematode (Poikilolaimus sp.) from Kopanang gold mine in South Africa, lives 1.4 km below the surface. Credit: Gaetan Borgonie, Extreme Life Isyensya, Belgium

Barely living “zombie” bacteria and other forms of life constitute an immense amount of carbon deep within Earth’s subsurface — 245 to 385 times greater than the carbon mass of all humans on the surface, according to scientists nearing the end of a 10-year international collaboration to reveal Earth’s innermost secrets.

On the eve of the American Geophysical Union’s annual meeting, scientists with the Deep Carbon Observatory today reported several transformational discoveries, including how much and what kinds of life exist in the deep subsurface under the greatest extremes of pressure, temperature, and low nutrient availability.

Drilling 2.5 kilometers into the seafloor, and sampling microbes from continental mines and boreholes more than 5 km deep, scientists have used the results to construct models of the ecosystem deep within the planet.

With insights from now hundreds of sites under the continents and seas, they have approximated the size of the deep biosphere — 2 to 2.3 billion cubic km (almost twice the volume of all oceans) — as well as the carbon mass of deep life: 15 to 23 billion tonnes (an average of at least 7.5 tonnes of carbon per cu km subsurface).

The work also helps determine types of extraterrestrial environments that could support life.

Among many key discoveries and insights:

  • The deep biosphere constitutes a world that can be viewed as a sort of “subterranean Galapagos” and includes members of all three domains of life: bacteria and archaea (microbes with no membrane-bound nucleus), and eukarya (microbes or multicellular organisms with cells that contain a nucleus as well as membrane-bound organelles)
  • Two types of microbes — bacteria and archaea — dominate Deep Earth. Among them are millions of distinct types, most yet to be discovered or characterized. This so-called microbial “dark matter” dramatically expands our perspective on the tree of life. Deep Life scientists say about 70% of Earth’s bacteria and archaea live in the subsurface
  • Deep microbes are often very different from their surface cousins, with life cycles on near-geologic timescales, dining in some cases on nothing more than energy from rocks
  • The genetic diversity of life below the surface is comparable to or exceeds that above the surface
  • While subsurface microbial communities differ greatly between environments, certain genera and higher taxonomic groups are ubiquitous — they appear planet-wide
  • Microbial community richness relates to the age of marine sediments where cells are found — suggesting that in older sediments, food energy has declined over time, reducing the microbial community
  • The absolute limits of life on Earth in terms of temperature, pressure, and energy availability have yet to be found. The records continually get broken. A frontrunner for Earth’s hottest organism in the natural world is Geogemma barossii, a single-celled organism thriving in hydrothermal vents on the seafloor. Its cells, tiny microscopic spheres, grow and replicate at 121 degrees Celsius (21 degrees hotter than the boiling point of water). Microbial life can survive up to 122°C, the record achieved in a lab culture (by comparison, the record-holding hottest place on Earth’s surface, in an uninhabited Iranian desert, is about 71°C — the temperature of well-done steak)
  • The record depth at which life has been found in the continental subsurface is approximately 5 km; the record in marine waters is 10.5 km from the ocean surface, a depth of extreme pressure; at 4000 meters depth, for example, the pressure is approximately 400 times greater than at sea level
  • Scientists have a better understanding of the impact on life in subsurface locations manipulated by humans (e.g., fracked shales, carbon capture and storage)

Ever-increasing accuracy and the declining cost of DNA sequencing, coupled with breakthroughs in deep ocean drilling technologies (pioneered on the Japanese scientific vessel Chikyu, designed to ultimately drill far beneath the seabed in some of the planet’s most seismically-active regions) made it possible for researchers to take their first detailed look at the composition of the deep biosphere.

There are comparable efforts to drill ever deeper beneath continental environments, using sampling devices that maintain pressure to preserve microbial life (none thought to pose any threat or benefit to human health).

To estimate the total mass of Earth’s subcontinental deep life, for example, scientists compiled data on cell concentration and microbial diversity from locations around the globe.

Led by Cara Magnabosco of the Flatiron Institute Center for Computational Biology, New York, and an international team of researchers, subsurface scientists factored in a suite of considerations, including global heat flow, surface temperature, depth and lithology — the physical characteristics of rocks in each location — to estimate that the continental subsurface hosts 2 to 6 × 10^29 cells.

Combined with estimates of subsurface life under the oceans, total global Deep Earth biomass is approximately 15 to 23 petagrams (15 to 23 billion tonnes) of carbon.

Says Mitch Sogin of the Marine Biological Laboratory Woods Hole, USA, co-chair of DCO’s Deep Life community of more than 300 researchers in 34 countries: “Exploring the deep subsurface is akin to exploring the Amazon rainforest. There is life everywhere, and everywhere there’s an awe-inspiring abundance of unexpected and unusual organisms.

“Molecular studies raise the likelihood that microbial dark matter is much more diverse than what we currently know it to be, and the deepest branching lineages challenge the three-domain concept introduced by Carl Woese in 1977. Perhaps we are approaching a nexus where the earliest possible branching patterns might be accessible through deep life investigation.

“Ten years ago, we knew far less about the physiologies of the bacteria and microbes that dominate the subsurface biosphere,” says Karen Lloyd, University of Tennessee at Knoxville, USA. “Today, we know that, in many places, they invest most of their energy to simply maintaining their existence and little into growth, which is a fascinating way to live.

“Today too, we know that subsurface life is common. Ten years ago, we had sampled only a few sites — the kinds of places we’d expect to find life. Now, thanks to ultra-deep sampling, we know we can find them pretty much everywhere, albeit the sampling has obviously reached only an infinitesimally tiny part of the deep biosphere.”

“Our studies of deep biosphere microbes have produced much new knowledge, but also a realization and far greater appreciation of how much we have yet to learn about subsurface life,” says Rick Colwell, Oregon State University, USA. “For example, scientists do not yet know all the ways in which deep subsurface life affects surface life and vice versa. And, for now, we can only marvel at the nature of the metabolisms that allow life to survive under the extremely impoverished and forbidding conditions for life in deep Earth.”

“A decade ago, we had no idea that the rocks beneath our feet could be so vastly inhabited. Experimental investigations told us that microbes could potentially survive to great depth; at that time, we had no evidence, and this has become real ten years later. This is simply fascinating and will surely foster enthusiasm to look for the biotic-abiotic fringe on Earth and elsewhere,” said Isabelle Daniel, University of Lyon 1, France.

Among the many remaining enigmas of deep life on Earth:

Movement: How does deep life spread — laterally through cracks in rocks? Up, down? How can deep life be so similar in South Africa and Seattle, Washington? Did they have similar origins and were separated by plate tectonics, for example? Or do the communities themselves move? What roles do big geological events (such as plate tectonics, earthquakes; creation of large igneous provinces; meteoritic bombardments) play in deep life movements?

Origins: Did life start deep in Earth (either within the crust, near hydrothermal vents, or in subduction zones) then migrate up, toward the sun? Or did life start in a warm little surface pond and migrate down? How do subsurface microbial zombies reproduce, or live without dividing for millions to tens of millions of years?

Energy: Is methane, hydrogen, or natural radiation (from uranium and other elements) the most important energy source for deep life? Which sources of deep energy are most important in different settings? How do the absence of nutrients, and extreme temperatures and pressure, impact microbial distribution and diversity in the subsurface?

“Even in dark and energetically challenging conditions, intraterrestrial ecosystems have uniquely evolved and persisted over millions of years. Expanding our knowledge of deep life will inspire new insights into planetary habitability, leading us to understand why life emerged on our planet and whether life persists in the Martian subsurface and other celestial bodies,” according toFumio Inagaki, Japan Agency for Marine-Earth Science and Technology.

Note: The above post is reprinted from materials provided by Deep Carbon Observatory.

Scientists brew lava and blow it up to better understand volcanoes

Ingo Sonder, a research scientist at UB's Center for Geohazards Studies, stirs the molten rock as it melts inside the furnace. Credit: Douglas Levere / University at Buffalo
Ingo Sonder, a research scientist at UB’s Center for Geohazards Studies, stirs the molten rock as it melts inside the furnace. Credit: Douglas Levere / University at Buffalo

What happens when lava and water meet? Explosive experiments with humanmade lava are helping to answer this important question.

By cooking up 10-gallon batches of molten rock and injecting them with water, scientists are shedding light on the basic physics of lava-water interactions, which are common in nature but poorly understood.

The project — a long-term, ongoing study led by the University at Buffalo — published its first results on Dec. 10 in the Journal of Geophysical Research (JGR): Solid Earth.

The scientists caution that the number of tests so far is small, so the team will need to conduct more experiments to draw firm conclusions.

The research shows that lava-water encounters can sometimes generate spontaneous explosions when there is at least about a foot of molten rock above the mixing point. In prior, smaller-scale studies that used about a coffee cup’s worth of lava, scientists in Germany found that they needed to apply an independent stimulus — in essence pricking the water within the lava — to trigger a blast.

The results reported in JGR: Solid Earth also point to some preliminary trends, showing that in a series of tests, larger, more brilliant reactions tended to occur when water rushed in more quickly and when lava was held in taller containers. (The team ran a total of 12 experiments in which water injection speeds ranged from about 6 to 30 feet per second, and in which lava was held in insulated steel boxes that ranged in height from about 8 to 18 inches.)

“If you think about a volcanic eruption, there are powerful forces at work, and it’s not a gentle thing,” says lead investigator Ingo Sonder, PhD, research scientist in the Center for Geohazards Studies at UB. “Our experiments are looking at the basic physics of what happens when water gets trapped inside molten rock.”

Sonder will discuss the findings at the 2018 AGU Fall Meeting today.

The study was funded by the National Science Foundation.

Understanding lava-water encounters at real volcanoes

In nature, the presence of water can make volcanic activity more dangerous, such as during past eruptions of Hawaii’s Kilauea and Iceland’s Eyjafjallajökull. But in other cases, the reaction between the two materials is subdued.

Sonder wants to understand why: “Sometimes, when lava encounters water, you see huge, explosive activity. Other times, there is no explosion, and the lava may just cool down and form some interesting shapes. What we are doing is trying to learn about the conditions that cause the most violent reactions.”

Eventually, findings from the long-term project could improve scientists’ ability to assess the risk that volcanoes near ice, lakes, oceans and underground water sources pose to people who live in surrounding communities.

“The research is still in the very early stages, so we have several years of work ahead of us before we’ll able to look at the whole range and combination of factors that influence what happens when lava or magma encounters water,” says Valentine, study co-author and director of the Center for Geohazards Studies at UB.

“However, everything we do is with the intention of making a difference in the real world,” he says. “Understanding basic processes having to do with volcanoes will ultimately help us make better forecasting calls when it comes to eruptions.”

Large-scale volcanic experiments

Lava-water interactions are associated with a phenomenon known as a molten fuel coolant interaction, in which a liquid fuel (a heat source) reacts violently with a liquid coolant. Much of the experimental work in this field has been done in the context of industrial safety, with a focus on understanding potential dangers in nuclear power plants and metal production sites.

The lava-water experiments build on previous research in this area, while focusing on molten rock.

The work takes place at UB’s Geohazards Field Station in Ashford, New York, some 40 miles south of Buffalo. Run by the UB Center for Geohazards Studies, the facility gives scientists a place to conduct large-scale experiments simulating volcanic processes and other hazards. In these tests, researchers can control conditions in a way that isn’t possible at a real volcano, dictating, for example, the shape of the lava column and the speed at which water shoots into it.

To make lava, scientists dump basaltic rock into a high-powered induction furnace. They heat it up for about 4 hours. When the mixture reaches a red-hot 2,400 degrees Fahrenheit, it’s poured into an insulated steel box and injected with two or three jets of water.

Then, a hammer drives a plunger into the mix to help stimulate an explosion. (In some cases, if enough molten rock was present above the injection point, an intense reaction began before the hammer fell).

In addition to identifying some preliminary trends, the published study attests to the wide variety of physical processes that can occur when lava and water meet.

“The system response to water injection varied from mild, evaporation-dominated processes, in which only a little melt was ejected from the container alongside some steam, to stronger reactions with visible steam jets, and with melt domains ejected to several meters height,” the scientists wrote in JGR: Solid Earth.

Breaking the vapor film?

The study did not examine why box height and water injection speed corresponded with the biggest explosions. But Sonder, whose has a background in geosciences and physics, offers some thoughts.

He explains that when a blob of water is trapped by a much hotter substance, the outer edges of the water vaporize, forming a protective film that envelops the rest of the water like a bubble, limiting heat transfer into the water and preventing it from boiling. This is called the Leidenfrost effect.

But when water is injected rapidly into a tall column of lava, the water — which is about three times lighter than the lava — will speed upward and mix with the molten rock more quickly. This may cause the vapor film to destabilize, Sonder says. In this situation, the unprotected water would expand rapidly in volume as it heated up, imposing high stresses on the lava, he says. The result? A violent explosion.

In contrast, when water is injected slowly into shallower pools of lava, the protective vapor film may hold, or the water may reach the lava’s surface or escape as steam before an explosion occurs, Sonder says.

He hopes to explore these theories through future experiments: “Not a lot of work has been done in this field,” he says, “so even some of these basic processes are really not well understood.”

Reference:
Ingo Sonder, Andrew G. Harp, Alison H. Graettinger, Pranabendu Moitra, Greg A. Valentine, Ralf Büttner, Bernd Zimanowski. Meter‐Scale Experiments on Magma‐Water Interaction. Journal of Geophysical Research: Solid Earth, 2018; DOI: 10.1029/2018JB015682

Note: The above post is reprinted from materials provided by University at Buffalo.

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